Meta-Analysis Package for R


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Documentation for package ‘metafor’ version 3.0-2

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A B C D E F G H I L M N P Q R S T U V W

metafor-package metafor: A Meta-Analysis Package for R

-- A --

addpoly Add Polygons to Forest Plots
addpoly.default Add Polygons to Forest Plots (Default Method)
addpoly.rma Add Polygons to Forest Plots (Method for 'rma' Objects)
aggregate Aggregate Multiple Effect Sizes or Outcomes Within Studies
aggregate.escalc Aggregate Multiple Effect Sizes or Outcomes Within Studies
AIC.rma Fit Statistics and Information Criteria for 'rma' Objects
anova Likelihood Ratio and Wald-Type Tests for 'rma' Objects
anova.rma Likelihood Ratio and Wald-Type Tests for 'rma' Objects

-- B --

baujat Baujat Plots for 'rma' Objects
baujat.rma Baujat Plots for 'rma' Objects
BIC.rma Fit Statistics and Information Criteria for 'rma' Objects
bldiag Construct Block Diagonal Matrix
blup Best Linear Unbiased Predictions for 'rma.uni' Objects
blup.rma.uni Best Linear Unbiased Predictions for 'rma.uni' Objects

-- C --

coef Extract the Model Coefficients and Coefficient Table from 'rma' and 'summary.rma' Objects
coef.permutest.rma.uni Extract the Model Coefficient Table from 'permutest.rma.uni' Objects
coef.rma Extract the Model Coefficients and Coefficient Table from 'rma' and 'summary.rma' Objects
coef.summary.rma Extract the Model Coefficients and Coefficient Table from 'rma' and 'summary.rma' Objects
confint Confidence Intervals for 'rma' Objects
confint.rma.glmm Confidence Intervals for 'rma' Objects
confint.rma.ls Confidence Intervals for 'rma' Objects
confint.rma.mh Confidence Intervals for 'rma' Objects
confint.rma.mv Confidence Intervals for 'rma' Objects
confint.rma.peto Confidence Intervals for 'rma' Objects
confint.rma.uni Confidence Intervals for 'rma' Objects
confint.rma.uni.selmodel Confidence Intervals for 'rma' Objects
contrmat Construct Contrast Matrix for Two-Group Comparisons
cooks.distance Outlier and Influential Case Diagnostics for 'rma.uni' Objects
cooks.distance.rma.mv Outlier and Influential Case Diagnostics for 'rma.mv' Objects
cooks.distance.rma.uni Outlier and Influential Case Diagnostics for 'rma.uni' Objects
cumul Cumulative Meta-Analysis for 'rma' Objects
cumul.rma.mh Cumulative Meta-Analysis for 'rma' Objects
cumul.rma.peto Cumulative Meta-Analysis for 'rma' Objects
cumul.rma.uni Cumulative Meta-Analysis for 'rma' Objects

-- D --

dat.anand1999 Studies on the Effectiveness of Oral Anticoagulants in Patients with Coronary Artery Disease
dat.assink2016 Studies on the Association between Recidivism and Mental Health
dat.bangertdrowns2004 Studies on the Effectiveness of Writing-to-Learn Interventions
dat.baskerville2012 Studies on the Effectiveness of Practice Facilitation Interventions
dat.bcg Studies on the Effectiveness of the BCG Vaccine Against Tuberculosis
dat.begg1989 Studies on Bone-Marrow Transplantation versus Chemotherapy for the Treatment of Leukemia
dat.berkey1998 Studies on Treatments for Periodontal Disease
dat.bonett2010 Studies on the Reliability of the CES-D Scale
dat.bornmann2007 Studies on Gender Differences in Grant and Fellowship Awards
dat.bourassa1996 Studies on the Association between Handedness and Eye-Dominance
dat.cannon2006 Studies on the Effectiveness of Intensive Versus Moderate Statin Therapy for Preventing Coronary Death or Myocardial Infarction
dat.cohen1981 Studies on the Relationship between Course Instructor Ratings and Student Achievement
dat.colditz1994 Studies on the Effectiveness of the BCG Vaccine Against Tuberculosis
dat.collins1985a Studies on the Treatment of Upper Gastrointestinal Bleeding by a Histamine H2 Antagonist
dat.collins1985b Studies on the Effects of Diuretics in Pregnancy
dat.craft2003 Studies on the Relationship between the Competitive State Anxiety Inventory-2 and Sport Performance
dat.crede2010 Studies on the Relationship between Class Attendance and Grades in College Students
dat.curtis1998 Studies on the Effects of Elevated CO2 Levels on Woody Plant Mass
dat.dagostino1998 Studies on the Effectiveness of Antihistamines in Reducing Symptoms of the Common Cold
dat.damico2009 Studies on Topical plus Systemic Antibiotics to Prevent Respiratory Tract Infections
dat.debruin2009 Studies on Standard Care Quality and HAART-Adherence
dat.dorn2007 Studies on Complementary and Alternative Medicine for Irritable Bowel Syndrome
dat.egger2001 Studies on the Effectiveness of Intravenous Magnesium in Acute Myocardial Infarction
dat.fine1993 Studies on Radiation Therapy with or without Adjuvant Chemotherapy in Patients with Malignant Gliomas
dat.gibson2002 Studies on the Effectiveness of Self-Management Education and Regular Medical Review for Adults with Asthma
dat.graves2010 Studies on the Effectiveness of Injected Cholera Vaccines
dat.hackshaw1998 Studies on the Risk of Lung Cancer in Women Exposed to Environmental Tobacco Smoke
dat.hahn2001 Studies on the Effectiveness of Different Rehydration Solutions for the Prevention of Unscheduled Intravenous Infusion in Children with Diarrhoea
dat.hart1999 Studies on the Effectiveness of Warfarin for Preventing Strokes
dat.hasselblad1998 Studies on the Effectiveness of Counseling for Smoking Cessation
dat.hine1989 Studies on Prophylactic Use of Lidocaine After a Heart Attack
dat.ishak2007 Studies on Deep-Brain Stimulation in Patients with Parkinson's disease
dat.kalaian1996 Studies on the Effectiveness of Coaching for the SAT
dat.kearon1998 Studies on the Accuracy of Venous Ultrasonography for the Diagonosis of Deep Venous Thrombosis
dat.knapp2017 Studies on Differences in Planning Performance in Schizophrenia Patients versus Healthy Controls
dat.konstantopoulos2011 Studies on the Effects of Modified School Calendars on Student Achievement
dat.landenberger2005 Studies on the Effectiveness of CBT for Reducing Recidivism
dat.laopaiboon2015 Studies on the Effectiveness of Azithromycin for Treating Lower Respiratory Tract Infections
dat.lau1992 Studies on Intravenous Streptokinase for Acute Myocardial Infarction
dat.lee2004 Studies on Acupoint P6 Stimulation for Preventing Nausea
dat.li2007 Studies on the Effectiveness of Intravenous Magnesium in Acute Myocardial Infarction
dat.lim2014 Studies on the association between maternal size, offspring size, and number of offsprings
dat.linde2005 Studies on the Effectiveness of St. John's Wort for Treating Depression
dat.lopez2019 Studies on the Effectiveness of CBT for Depression
dat.maire2019 Studies on Temporal Trends in Fish Community Structures in French Rivers
dat.mcdaniel1994 Studies on the Validity of Employment Interviews
dat.molloy2014 Studies on the Relationship between Conscientiousness and Medication Adherence
dat.moura2021 Studies on Assortative Mating
dat.nielweise2007 Studies on Anti-Infective-Treated Central Venous Catheters for Prevention of Catheter-Related Bloodstream Infections
dat.nielweise2008 Studies on Anti-Infective-Treated Central Venous Catheters for Prevention of Catheter-Related Bloodstream Infections
dat.normand1999 Studies on the Length of Hospital Stay of Stroke Patients
dat.obrien2003 Studies on the Relationship Between BMI and Risk of Preeclampsia
dat.pagliaro1992 Studies on the Effectiveness of Nonsurgical Treatments in Cirrhosis
dat.pignon2000 Studies on the Effectiveness of Locoregional Treatment plus Chemotherapy for Head and Neck Squamous-Cell Carcinoma
dat.pritz1997 Studies on the Effectiveness of Hyperdynamic Therapy for Treating Cerebral Vasospasm
dat.raudenbush1985 Studies on Assessing the Effects of Teacher Expectations on Pupil IQ
dat.riley2003 Studies on MYC-N as a Prognostic Marker for Neuroblastoma
dat.senn2013 Studies on the Effectiveness of Glucose-Lowering Agents
dat.vanhowe1999 Studies on the Association between Circumcision and HIV Infection
dat.viechtbauer2021 Studies to Illustrate Model Checking Methods
dat.yusuf1985 Studies of Beta Blockers During and After Myocardial Infarction
deviance.rma Fit Statistics and Information Criteria for 'rma' Objects
df.residual.rma Fit Statistics and Information Criteria for 'rma' Objects
dfbetas Outlier and Influential Case Diagnostics for 'rma.uni' Objects
dfbetas.rma.mv Outlier and Influential Case Diagnostics for 'rma.mv' Objects
dfbetas.rma.uni Outlier and Influential Case Diagnostics for 'rma.uni' Objects
dfround Round Variables in a Data Frame

-- E --

escalc Calculate Effect Sizes and Outcome Measures

-- F --

fitstats Fit Statistics and Information Criteria for 'rma' Objects
fitstats.rma Fit Statistics and Information Criteria for 'rma' Objects
fitted Fitted Values for 'rma' Objects
fitted.rma Fitted Values for 'rma' Objects
forest Forest Plots
forest.cumul.rma Forest Plots (Method for 'cumul.rma' Objects)
forest.default Forest Plots (Default Method)
forest.rma Forest Plots (Method for 'rma' Objects)
formula Model Formulae for 'rma' Objects
formula.rma Model Formulae for 'rma' Objects
fsn Fail-Safe N Analysis (File Drawer Analysis)
funnel Funnel Plots
funnel.default Funnel Plots
funnel.rma Funnel Plots

-- G --

galbraith Radial (Galbraith) Plots for 'rma' Objects
gosh GOSH Plots for 'rma' Objects
gosh.rma GOSH Plots for 'rma' Objects

-- H --

hatvalues Outlier and Influential Case Diagnostics for 'rma.uni' Objects
hatvalues.rma.mv Outlier and Influential Case Diagnostics for 'rma.mv' Objects
hatvalues.rma.uni Outlier and Influential Case Diagnostics for 'rma.uni' Objects
hc Meta-Analysis based on the Method by Henmi and Copas (2010)
hc.rma.uni Meta-Analysis based on the Method by Henmi and Copas (2010)

-- I --

influence Outlier and Influential Case Diagnostics for 'rma.uni' Objects
influence.rma.mv Outlier and Influential Case Diagnostics for 'rma.mv' Objects
influence.rma.uni Outlier and Influential Case Diagnostics for 'rma.uni' Objects

-- L --

labbe L'Abbe Plots for 'rma' Objects
labbe.rma L'Abbe Plots for 'rma' Objects
leave1out Leave-One-Out Diagnostics for 'rma' Objects
leave1out.rma.mh Leave-One-Out Diagnostics for 'rma' Objects
leave1out.rma.peto Leave-One-Out Diagnostics for 'rma' Objects
leave1out.rma.uni Leave-One-Out Diagnostics for 'rma' Objects
llplot Likelihood Plot of a Parameter Corresponding to an Effect Size or Outcome Measure
logLik.rma Fit Statistics and Information Criteria for 'rma' Objects

-- M --

matreg Fit Regression Models based on Correlation and Covariance Matrices
metafor metafor: A Meta-Analysis Package for R
metafor.news Read News File of the Metafor Package
model.matrix Model Matrix for 'rma' Objects
model.matrix.rma Model Matrix for 'rma' Objects

-- N --

nobs.rma Fit Statistics and Information Criteria for 'rma' Objects

-- P --

permutest Permutation Tests for 'rma.uni' Objects
permutest.rma.uni Permutation Tests for 'rma.uni' Objects
plot.cumul.rma Plot Method for 'cumul.rma' Objects
plot.gosh.rma Plot Method for 'gosh.rma' Objects
plot.infl.rma.uni Plot Method for 'infl.rma.uni' Objects
plot.profile.rma Profile Plots for 'rma' Objects
plot.rma Plot Method for 'rma' Objects
plot.rma.glmm Plot Method for 'rma' Objects
plot.rma.mh Plot Method for 'rma' Objects
plot.rma.peto Plot Method for 'rma' Objects
plot.rma.uni Plot Method for 'rma' Objects
plot.rma.uni.selmodel Plot Method for 'plot.rma.uni.selmodel' Objects
points.regplot Scatter Plots / Bubble Plots
predict Predicted Values for 'rma' Objects
predict.rma Predicted Values for 'rma' Objects
predict.rma.ls Predicted Values for 'rma' Objects
print.anova.rma Print Method for 'anova.rma' Objects
print.confint.rma Print Methods for 'confint.rma' and 'list.confint.rma' Objects
print.escalc Print and Summary Methods for 'escalc' Objects
print.fsn Print Method for 'fsn' Objects
print.gosh.rma Print Method for 'gosh.rma' Objects
print.hc.rma.uni Print Method for 'hc.rma.uni' Objects
print.infl.rma.uni Outlier and Influential Case Diagnostics for 'rma.uni' Objects
print.list.confint.rma Print Methods for 'confint.rma' and 'list.confint.rma' Objects
print.list.rma Print method for 'list.rma' Objects
print.matreg Print Method for 'matreg' Objects
print.permutest.rma.uni Print Method for 'permutest.rma.uni' Objects
print.profile.rma Profile Plots for 'rma' Objects
print.ranktest Print Method for 'ranktest' Objects
print.regtest Print Method for 'regtest' Objects
print.rma Print and Summary Methods for 'rma' Objects
print.rma.glmm Print and Summary Methods for 'rma' Objects
print.rma.mh Print and Summary Methods for 'rma' Objects
print.rma.mv Print and Summary Methods for 'rma' Objects
print.rma.peto Print and Summary Methods for 'rma' Objects
print.rma.uni Print and Summary Methods for 'rma' Objects
print.robust.rma Print Method for 'robust.rma' Objects
print.summary.rma Print and Summary Methods for 'rma' Objects
print.tes Test of Excess Significance
print.vif.rma Variance Inflation Factors for 'rma' Objects
profile Profile Plots for 'rma' Objects
profile.rma.ls Profile Plots for 'rma' Objects
profile.rma.mv Profile Plots for 'rma' Objects
profile.rma.uni Profile Plots for 'rma' Objects
profile.rma.uni.selmodel Profile Plots for 'rma' Objects

-- Q --

qqnorm Normal QQ Plots for 'rma' Objects
qqnorm.rma.glmm Normal QQ Plots for 'rma' Objects
qqnorm.rma.mh Normal QQ Plots for 'rma' Objects
qqnorm.rma.mv Normal QQ Plots for 'rma' Objects
qqnorm.rma.peto Normal QQ Plots for 'rma' Objects
qqnorm.rma.uni Normal QQ Plots for 'rma' Objects

-- R --

radial Radial (Galbraith) Plots for 'rma' Objects
radial.rma Radial (Galbraith) Plots for 'rma' Objects
ranef Best Linear Unbiased Predictions for 'rma.uni' and 'rma.mv' Objects
ranef.rma.mv Best Linear Unbiased Predictions for 'rma.uni' and 'rma.mv' Objects
ranef.rma.uni Best Linear Unbiased Predictions for 'rma.uni' and 'rma.mv' Objects
ranktest Rank Correlation Test for Funnel Plot Asymmetry
ranktest.default Rank Correlation Test for Funnel Plot Asymmetry
ranktest.rma Rank Correlation Test for Funnel Plot Asymmetry
rcalc Calculate the Variance-Covariance of Correlation Coefficients
regplot Scatter Plots / Bubble Plots
regplot.rma Scatter Plots / Bubble Plots
regtest Regression Test for Funnel Plot Asymmetry
regtest.default Regression Test for Funnel Plot Asymmetry
regtest.rma Regression Test for Funnel Plot Asymmetry
replmiss Replace Missing Values in a Vector
reporter Dynamically Generated Analysis Reports for 'rma.uni' Objects
reporter.rma.uni Dynamically Generated Analysis Reports for 'rma.uni' Objects
residuals Residual Values based on 'rma' Objects
residuals.rma Residual Values based on 'rma' Objects
rma Meta-Analysis via Linear (Mixed-Effects) Models
rma.glmm Meta-Analysis via Generalized Linear (Mixed-Effects) Models
rma.mh Meta-Analysis via the Mantel-Haenszel Method
rma.mv Meta-Analysis via Multivariate/Multilevel Linear (Mixed-Effects) Models
rma.peto Meta-Analysis via Peto's Method
rma.uni Meta-Analysis via Linear (Mixed-Effects) Models
robust (Cluster) Robust Tests and Confidence Intervals for 'rma' Objects
robust.rma.mv (Cluster) Robust Tests and Confidence Intervals for 'rma' Objects
robust.rma.uni (Cluster) Robust Tests and Confidence Intervals for 'rma' Objects
rstandard Residual Values based on 'rma' Objects
rstandard.rma.mh Residual Values based on 'rma' Objects
rstandard.rma.mv Residual Values based on 'rma' Objects
rstandard.rma.peto Residual Values based on 'rma' Objects
rstandard.rma.uni Residual Values based on 'rma' Objects
rstudent Residual Values based on 'rma' Objects
rstudent.rma.mh Residual Values based on 'rma' Objects
rstudent.rma.mv Residual Values based on 'rma' Objects
rstudent.rma.peto Residual Values based on 'rma' Objects
rstudent.rma.uni Residual Values based on 'rma' Objects

-- S --

selmodel Selection Models
selmodel.rma.uni Selection Models
simulate Simulate Method for 'rma' Objects
simulate.rma Simulate Method for 'rma' Objects
summary.escalc Print and Summary Methods for 'escalc' Objects
summary.rma Print and Summary Methods for 'rma' Objects

-- T --

tes Test of Excess Significance
tes.default Test of Excess Significance
tes.rma Test of Excess Significance
to.long Convert Data from Vector to Long Format
to.table Convert Data from Vector to Table Format
to.wide Convert Data from a Long to a Wide Format
transf Transformation Functions
transf.abt Transformation Functions
transf.ahw Transformation Functions
transf.arcsin Transformation Functions
transf.dtobesd Transformation Functions
transf.dtocles Transformation Functions
transf.dtomd Transformation Functions
transf.dtorpb Transformation Functions
transf.dtou1 Transformation Functions
transf.dtou2 Transformation Functions
transf.dtou3 Transformation Functions
transf.exp.int Transformation Functions
transf.iabt Transformation Functions
transf.iahw Transformation Functions
transf.iarcsin Transformation Functions
transf.iirft Transformation Functions
transf.ilogit Transformation Functions
transf.ilogit.int Transformation Functions
transf.ipft Transformation Functions
transf.ipft.hm Transformation Functions
transf.irft Transformation Functions
transf.isqrt Transformation Functions
transf.logit Transformation Functions
transf.logortord Transformation Functions
transf.logortorr Transformation Functions
transf.pft Transformation Functions
transf.rtoz Transformation Functions
transf.ztor Transformation Functions
transf.ztor.int Transformation Functions
trimfill Trim and Fill Analysis for 'rma.uni' Objects
trimfill.rma.uni Trim and Fill Analysis for 'rma.uni' Objects

-- U --

update Model Updating for 'rma' Objects
update.rma Model Updating for 'rma' Objects

-- V --

vcov Extract Various Types of Variance-Covariance Matrices from 'rma' Objects
vcov.rma Extract Various Types of Variance-Covariance Matrices from 'rma' Objects
vec2mat Convert a Vector into a Square Matrix
vif Variance Inflation Factors for 'rma' Objects
vif.rma Variance Inflation Factors for 'rma' Objects

-- W --

weights Compute Weights for 'rma' Objects
weights.rma Compute Weights for 'rma' Objects
weights.rma.glmm Compute Weights for 'rma' Objects
weights.rma.mh Compute Weights for 'rma' Objects
weights.rma.mv Compute Weights for 'rma' Objects
weights.rma.peto Compute Weights for 'rma' Objects
weights.rma.uni Compute Weights for 'rma' Objects